DBNascent | Samples

SRR3317159 Sample ID 1605

**Data sources**
Paper identifier	Liu2013brd4
SRP accession	SRP031885
GEO accession	GSE51633
Samples	SRR3317159

**Technical details**
QC score	1
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	74 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	609 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HEK293T
Clone/Individual
Strain
Genotype
Construct	siRNA Brd4

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	siRNA Brd4 #2
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	1
Sample NRO score	1
Raw read length	36
Read depth after trimming	21,663,970
Duplication proportion	0.40741
Proportion reads mapped	0.8055
Exon/intron ratio	2.37874
Unique read proportion	0.63515

**Bidirectionals**
Total # Tfit bidirectionals	26720
# Promoter Tfit bidirectionals	11547
# Intronic Tfit bidirectionals	11330
# Intergenic Tfit bidirectionals	2995
Total # dREG bidirectionals	14069
# Promoter dREG bidirectionals	6873
# Intronic dREG bidirectionals	4920
# Intergenic dREG bidirectionals	2262
Part of Tfit master merge?	True
Part of dREG master merge?	True