DBNascent | Samples

SRR3317160 Sample ID 1606

**Data sources**
Paper identifier	Liu2013brd4
SRP accession	SRP031885
GEO accession	GSE51633
Samples	SRR3317160

**Technical details**
QC score	3
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	53 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	930 Kb
dREG bidirectional regions	BED file	289 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HEK293T
Clone/Individual
Strain
Genotype
Construct	siRNA control

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	50
Read depth after trimming	38,231,899
Duplication proportion	0.79024
Proportion reads mapped	0.8944
Exon/intron ratio	3.22263
Unique read proportion	0.22401

**Bidirectionals**
Total # Tfit bidirectionals	10750
# Promoter Tfit bidirectionals	5605
# Intronic Tfit bidirectionals	3920
# Intergenic Tfit bidirectionals	565
Total # dREG bidirectionals	6715
# Promoter dREG bidirectionals	4237
# Intronic dREG bidirectionals	1730
# Intergenic dREG bidirectionals	811
Part of Tfit master merge?	True
Part of dREG master merge?	True