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SRR3317162 Sample ID 1608
| Paper identifier | Liu2013brd4 |
| SRP accession | SRP031885 |
| GEO accession | GSE51633 |
| Samples | SRR3317162 |
| QC score | 2 |
| Replicate | 2 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 99 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 2 Mb |
| dREG bidirectional regions | BED file | 538 Kb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | HEK293T |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct | siRNA JMJD6 |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | siRNA JMJD6 #2 |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 2 |
| Sample NRO score | 1 |
| Raw read length | 50 |
| Read depth after trimming | 36,967,640 |
| Duplication proportion | 0.51355 |
| Proportion reads mapped | 0.8968 |
| Exon/intron ratio | 2.66904 |
| Unique read proportion | 0.51442 |
| Total # Tfit bidirectionals | 18186 |
| # Promoter Tfit bidirectionals | 9060 |
| # Intronic Tfit bidirectionals | 6894 |
| # Intergenic Tfit bidirectionals | 1887 |
| Total # dREG bidirectionals | 12460 |
| # Promoter dREG bidirectionals | 6572 |
| # Intronic dREG bidirectionals | 4064 |
| # Intergenic dREG bidirectionals | 1936 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |