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SRR3476588 Sample ID 438
| Paper identifier | Chen2016cutoff |
| SRP accession | SRP074388 |
| GEO accession | GSE81090 |
| Samples | SRR3476588 |
| QC score | 5 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | random primed |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 22 Mb |
| Stranded gene read counts | TXT file | 716 Kb |
| All data files | ZIP archive | |
| Organism | D. melanogaster |
| Sample type | tissue |
| Cell type | ovary |
| Clone/Individual | |
| Strain | |
| Genotype | P{GAL4::VP16-nos.UTR}CG6325MVD1/P{y[+t7.7] v[+t1.8]=TRiP.GL00054}attP2 |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 5 |
| Sample NRO score | 3 |
| Raw read length | 50 |
| Read depth after trimming | 51,102,223 |
| Duplication proportion | 0.98378 |
| Proportion reads mapped | 0.9439 |
| Exon/intron ratio | 5.52752 |
| Unique read proportion | 0.04166 |
| Total # Tfit bidirectionals | None |
| # Promoter Tfit bidirectionals | None |
| # Intronic Tfit bidirectionals | None |
| # Intergenic Tfit bidirectionals | None |
| Total # dREG bidirectionals | None |
| # Promoter dREG bidirectionals | None |
| # Intronic dREG bidirectionals | None |
| # Intergenic dREG bidirectionals | None |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |