DBNascent | Samples

SRR352503 Sample ID 1203

**Data sources**
Paper identifier	Khodor2011nascent
SRP accession	SRP008848
GEO accession	GSE32950
Samples	SRR352503

**Technical details**
QC score	4
Replicate	1
Protocol	RNA-seq variant
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	45 Mb
Stranded gene read counts	TXT file	713 Kb
Unstranded bidirectional read counts	TXT file
Tfit bidirectional regions	BED file
dREG bidirectional regions	BED file
All data files	ZIP archive

**Cellular details**
Organism	D. melanogaster
Sample type	cell line
Cell type	S2
Clone/Individual
Strain
Genotype	RpII215 G3973A
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	ChrRNA-Seq; This RpII215 mutation is also known as the C4 mutation
Analysis notes	Unstranded

**Sample metrics**
Sample QC score	4
Sample NRO score	3
Raw read length	80
Read depth after trimming	24,149,922
Duplication proportion	0.84072
Proportion reads mapped	0.9475
Exon/intron ratio	6.68706
Unique read proportion	0.17506

**Bidirectionals**
Total # Tfit bidirectionals	None
# Promoter Tfit bidirectionals	None
# Intronic Tfit bidirectionals	None
# Intergenic Tfit bidirectionals	None
Total # dREG bidirectionals	None
# Promoter dREG bidirectionals	None
# Intronic dREG bidirectionals	None
# Intergenic dREG bidirectionals	None
Part of Tfit master merge?	False
Part of dREG master merge?	False