Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRR352504 Sample ID 1204
| Paper identifier | Khodor2011nascent |
| SRP accession | SRP008848 |
| GEO accession | GSE32950 |
| Samples | SRR352504 |
| QC score | 4 |
| Replicate | 2 |
| Protocol | RNA-seq variant |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 46 Mb |
| Stranded gene read counts | TXT file | 713 Kb |
| All data files | ZIP archive | |
| Organism | D. melanogaster |
| Sample type | cell line |
| Cell type | S2 |
| Clone/Individual | |
| Strain | |
| Genotype | RpII215 G3973A |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | ChrRNA-Seq; This RpII215 mutation is also known as the C4 mutation |
| Analysis notes | Unstranded |
| Sample QC score | 4 |
| Sample NRO score | 3 |
| Raw read length | 80 |
| Read depth after trimming | 22,503,883 |
| Duplication proportion | 0.82664 |
| Proportion reads mapped | 0.9369 |
| Exon/intron ratio | 5.34777 |
| Unique read proportion | 0.18835 |
| Total # Tfit bidirectionals | None |
| # Promoter Tfit bidirectionals | None |
| # Intronic Tfit bidirectionals | None |
| # Intergenic Tfit bidirectionals | None |
| Total # dREG bidirectionals | None |
| # Promoter dREG bidirectionals | None |
| # Intronic dREG bidirectionals | None |
| # Intergenic dREG bidirectionals | None |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |