DBNascent | Samples

SRR3535364 Sample ID 2735

**Data sources**
Paper identifier	Yang2017glucocorticoid
SRP	SRP075268
Samples	SRR3535364

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	126 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	893 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	17-beta-estradiol (100 nM)	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	50
Read depth after trimming	42,806,678
Duplication proportion	0.50412
Proportion reads mapped	0.9348
Exon/intron ratio	2.86812
Unique read proportion	0.54241

**Bidirectionals**
Total # Tfit bidirectionals	24010
# Promoter Tfit bidirectionals	10094
# Intronic Tfit bidirectionals	9261
# Intergenic Tfit bidirectionals	4706
Total # dREG bidirectionals	20595
# Promoter dREG bidirectionals	8163
# Intronic dREG bidirectionals	8530
# Intergenic dREG bidirectionals	4063
Part of Tfit master merge?	True
Part of dREG master merge?	True