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SRR3541136 Sample ID 2431
| Paper identifier | Tan2018dismissal |
| SRP accession | SRP250948 |
| GEO accession | GSE73957 |
| Samples | SRR3541136 |
| QC score | 2 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | MCF7 |
| Clone/Individual | |
| Strain | |
| Genotype | Kdm2a H212A HA-tag (stable) |
| Construct | siRNA Kdm2a 5'UTR |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | 17-beta-estradiol (100 nM) | -1 hr | 0 hr | 1 hr |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 2 |
| Sample NRO score | 1 |
| Raw read length | 50 |
| Read depth after trimming | 58,406,996 |
| Duplication proportion | 0.62007 |
| Proportion reads mapped | 0.8478 |
| Exon/intron ratio | 2.47912 |
| Unique read proportion | 0.51768 |
| Total # Tfit bidirectionals | 19512 |
| # Promoter Tfit bidirectionals | 6926 |
| # Intronic Tfit bidirectionals | 8278 |
| # Intergenic Tfit bidirectionals | 3375 |
| Total # dREG bidirectionals | 15524 |
| # Promoter dREG bidirectionals | 6485 |
| # Intronic dREG bidirectionals | 6318 |
| # Intergenic dREG bidirectionals | 2586 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |