DBNascent | Samples

SRR3619369 Sample ID 2531

**Data sources**
Paper identifier	Vian2018energetics
SRP accession	SRP075985
GEO accession	GSE82144
Samples	SRR3619369

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	299 Mb
Stranded gene read counts	TXT file	929 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	splenic B cell
Clone/Individual
Strain
Genotype	Myc fl/fl
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	Poor description of treatment methods
Analysis notes

**Sample metrics**
Sample QC score	3
Sample NRO score	1
Raw read length	50
Read depth after trimming	213,400,571
Duplication proportion	0.72688
Proportion reads mapped	0.793
Exon/intron ratio	2.97581
Unique read proportion	0.48174

**Bidirectionals**
Total # Tfit bidirectionals	24534
# Promoter Tfit bidirectionals	10582
# Intronic Tfit bidirectionals	7042
# Intergenic Tfit bidirectionals	4925
Total # dREG bidirectionals	29556
# Promoter dREG bidirectionals	5749
# Intronic dREG bidirectionals	12350
# Intergenic dREG bidirectionals	8776
Part of Tfit master merge?	False
Part of dREG master merge?	False