DBNascent | Samples

SRR3633296 Sample ID 1476

**Data sources**
Paper identifier	Li2017grid
SRP accession	SRP076189
GEO accession	GSE82312
Samples	SRR3633296

**Technical details**
QC score	4
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	18 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	383 Kb
dREG bidirectional regions	BED file	108 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MDA-MB-231
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	DMSO (0.05%)	-6 hr	0 hr	6 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	4
Sample NRO score	2
Raw read length	40
Read depth after trimming	17,419,904
Duplication proportion	0.87025
Proportion reads mapped	0.6333
Exon/intron ratio	4.7094
Unique read proportion	0.13245

**Bidirectionals**
Total # Tfit bidirectionals	4441
# Promoter Tfit bidirectionals	2284
# Intronic Tfit bidirectionals	1361
# Intergenic Tfit bidirectionals	329
Total # dREG bidirectionals	2512
# Promoter dREG bidirectionals	1745
# Intronic dREG bidirectionals	590
# Intergenic dREG bidirectionals	259
Part of Tfit master merge?	True
Part of dREG master merge?	True