DBNascent | Samples

SRR3633297 Sample ID 1477

**Data sources**
Paper identifier	Li2017grid
SRP accession	SRP076189
GEO accession	GSE82312
Samples	SRR3633297

**Technical details**
QC score	4
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	20 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	570 Kb
dREG bidirectional regions	BED file	184 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MDA-MB-231
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	DMSO (0.05%)	-6 hr	0 hr	6 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	4
Sample NRO score	2
Raw read length	40
Read depth after trimming	18,132,243
Duplication proportion	0.85216
Proportion reads mapped	0.6568
Exon/intron ratio	4.84615
Unique read proportion	0.15139

**Bidirectionals**
Total # Tfit bidirectionals	6620
# Promoter Tfit bidirectionals	3479
# Intronic Tfit bidirectionals	2170
# Intergenic Tfit bidirectionals	549
Total # dREG bidirectionals	4288
# Promoter dREG bidirectionals	3090
# Intronic dREG bidirectionals	1023
# Intergenic dREG bidirectionals	347
Part of Tfit master merge?	True
Part of dREG master merge?	True