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SRR3633297 Sample ID 1477
| Paper identifier | Li2017grid |
| SRP accession | SRP076189 |
| GEO accession | GSE82312 |
| Samples | SRR3633297 |
| QC score | 4 |
| Replicate | 2 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 20 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 570 Kb |
| dREG bidirectional regions | BED file | 184 Kb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | MDA-MB-231 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| vehicle | DMSO (0.05%) | -6 hr | 0 hr | 6 hr |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 4 |
| Sample NRO score | 2 |
| Raw read length | 40 |
| Read depth after trimming | 18,132,243 |
| Duplication proportion | 0.85216 |
| Proportion reads mapped | 0.6568 |
| Exon/intron ratio | 4.84615 |
| Unique read proportion | 0.15139 |
| Total # Tfit bidirectionals | 6620 |
| # Promoter Tfit bidirectionals | 3479 |
| # Intronic Tfit bidirectionals | 2170 |
| # Intergenic Tfit bidirectionals | 549 |
| Total # dREG bidirectionals | 4288 |
| # Promoter dREG bidirectionals | 3090 |
| # Intronic dREG bidirectionals | 1023 |
| # Intergenic dREG bidirectionals | 347 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |