DBNascent | Samples

SRR3647035 Sample ID 960

**Data sources**
Paper identifier	Hetzel2016nascent
SRP accession	SRP076266
GEO accession	GSE83108
Samples	SRR3647035

**Technical details**
QC score	3
Replicate	2
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	41 Mb
Stranded gene read counts	TXT file
Unstranded bidirectional read counts	TXT file
Tfit bidirectional regions	BED file
dREG bidirectional regions	BED file
All data files	ZIP archive

**Cellular details**
Organism	A. thaliana
Sample type	tissue
Cell type	seed
Clone/Individual
Strain	Col-0
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	Co-first author with Duttke.Plates were placed at 4 degrees C for 3 d for vernalization and then placed in growth chambers with 24 h of light at 22 degrees C for 6 d before tissue collection.
Analysis notes

**Sample metrics**
Sample QC score	3
Sample NRO score	1
Raw read length	75
Read depth after trimming	50,222,689
Duplication proportion	0.79085
Proportion reads mapped	0.6337
Exon/intron ratio	1.56037
Unique read proportion	0.27267

**Bidirectionals**
Total # Tfit bidirectionals	None
# Promoter Tfit bidirectionals	None
# Intronic Tfit bidirectionals	None
# Intergenic Tfit bidirectionals	None
Total # dREG bidirectionals	None
# Promoter dREG bidirectionals	None
# Intronic dREG bidirectionals	None
# Intergenic dREG bidirectionals	None
Part of Tfit master merge?	False
Part of dREG master merge?	False