DBNascent | Samples

SRR3679881 Sample ID 1084

**Data sources**
Paper identifier	Johnson2017biotin
SRP accession	SRP076710
GEO accession	GSE83474
Samples	SRR3679881

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	157 Mb
Stranded gene read counts	TXT file	933 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	tissue
Cell type	cortex
Clone/Individual
Strain	C57BL/6
Genotype	Mecp2 R106W Tavi-tag
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	Male mice, 2 mice per bio replicate
Analysis notes

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	50
Read depth after trimming	66,980,542
Duplication proportion	0.57562
Proportion reads mapped	0.8614
Exon/intron ratio	1.97586
Unique read proportion	0.72947

**Bidirectionals**
Total # Tfit bidirectionals	30494
# Promoter Tfit bidirectionals	10847
# Intronic Tfit bidirectionals	10417
# Intergenic Tfit bidirectionals	6144
Total # dREG bidirectionals	28476
# Promoter dREG bidirectionals	9114
# Intronic dREG bidirectionals	11130
# Intergenic dREG bidirectionals	5818
Part of Tfit master merge?	True
Part of dREG master merge?	True