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SRR3679881 Sample ID 1084
| Paper identifier | Johnson2017biotin |
| SRP accession | SRP076710 |
| GEO accession | GSE83474 |
| Samples | SRR3679881 |
| QC score | 2 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 157 Mb |
| Stranded gene read counts | TXT file | 933 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 3 Mb |
| dREG bidirectional regions | BED file | 1 Mb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | tissue |
| Cell type | cortex |
| Clone/Individual | |
| Strain | C57BL/6 |
| Genotype | Mecp2 R106W Tavi-tag |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | Male mice, 2 mice per bio replicate |
| Analysis notes |
| Sample QC score | 2 |
| Sample NRO score | 1 |
| Raw read length | 50 |
| Read depth after trimming | 66,980,542 |
| Duplication proportion | 0.57562 |
| Proportion reads mapped | 0.8614 |
| Exon/intron ratio | 1.97586 |
| Unique read proportion | 0.72947 |
| Total # Tfit bidirectionals | 30494 |
| # Promoter Tfit bidirectionals | 10847 |
| # Intronic Tfit bidirectionals | 10417 |
| # Intergenic Tfit bidirectionals | 6144 |
| Total # dREG bidirectionals | 28476 |
| # Promoter dREG bidirectionals | 9114 |
| # Intronic dREG bidirectionals | 11130 |
| # Intergenic dREG bidirectionals | 5818 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |