DBNascent | Samples

SRR3713700 Sample ID 2828

**Data sources**
Paper identifier	Zhao2016high
SRP accession	SRP077005
GEO accession	GSE83660
Samples	SRR3713700

**Technical details**
QC score	1
Replicate	1
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	True
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	112 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	Kasumi-1
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	DMSO	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Originally downloaded/processed 6 RNA-Seq samples mixed in with GRO-Seq - subsequently deleted from database

**Sample metrics**
Sample QC score	1
Sample NRO score	3
Raw read length	51
Read depth after trimming	33,024,069
Duplication proportion	0.36987
Proportion reads mapped	0.7633
Exon/intron ratio	5.00883
Unique read proportion	0.70809

**Bidirectionals**
Total # Tfit bidirectionals	29763
# Promoter Tfit bidirectionals	11858
# Intronic Tfit bidirectionals	12681
# Intergenic Tfit bidirectionals	5342
Total # dREG bidirectionals	23853
# Promoter dREG bidirectionals	8860
# Intronic dREG bidirectionals	9957
# Intergenic dREG bidirectionals	4625
Part of Tfit master merge?	True
Part of dREG master merge?	True