Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRR3713701 Sample ID 2829
| Paper identifier | Zhao2016high |
| SRP accession | SRP077005 |
| GEO accession | GSE83660 |
| Samples | SRR3713701 |
| QC score | 1 |
| Replicate | 1 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | True |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | Kasumi-1 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | JQ1 (250 nM) | -1 hr | 0 hr | 1 hr |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Originally downloaded/processed 6 RNA-Seq samples mixed in with GRO-Seq - subsequently deleted from database |
| Sample QC score | 1 |
| Sample NRO score | 3 |
| Raw read length | 51 |
| Read depth after trimming | 41,130,177 |
| Duplication proportion | 0.42684 |
| Proportion reads mapped | 0.7632 |
| Exon/intron ratio | 5.58529 |
| Unique read proportion | 0.67159 |
| Total # Tfit bidirectionals | 30004 |
| # Promoter Tfit bidirectionals | 11690 |
| # Intronic Tfit bidirectionals | 13315 |
| # Intergenic Tfit bidirectionals | 5014 |
| Total # dREG bidirectionals | 24664 |
| # Promoter dREG bidirectionals | 8655 |
| # Intronic dREG bidirectionals | 10539 |
| # Intergenic dREG bidirectionals | 4776 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |