DBNascent | Samples

SRR3713716 Sample ID 2838

**Data sources**
Paper identifier	Zhao2016high
SRP accession	SRP077005
GEO accession	GSE83660
Samples	SRR3713716

**Technical details**
QC score	2
Replicate	1
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	True
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	130 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	1024 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	Kasumi-1
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	JQ1 (250 nM)	-30 min	0 min	30 min

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Originally downloaded/processed 6 RNA-Seq samples mixed in with GRO-Seq - subsequently deleted from database

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	75
Read depth after trimming	44,409,007
Duplication proportion	0.53235
Proportion reads mapped	0.868
Exon/intron ratio	3.65067
Unique read proportion	0.61318

**Bidirectionals**
Total # Tfit bidirectionals	25833
# Promoter Tfit bidirectionals	9609
# Intronic Tfit bidirectionals	11667
# Intergenic Tfit bidirectionals	4233
Total # dREG bidirectionals	23603
# Promoter dREG bidirectionals	8704
# Intronic dREG bidirectionals	10235
# Intergenic dREG bidirectionals	4392
Part of Tfit master merge?	True
Part of dREG master merge?	True