Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRR3713717 Sample ID 2839
| Paper identifier | Zhao2016high |
| SRP accession | SRP077005 |
| GEO accession | GSE83660 |
| Samples | SRR3713717 |
| QC score | 2 |
| Replicate | 2 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | True |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | Kasumi-1 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | JQ1 (250 nM) | -30 min | 0 min | 30 min |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Originally downloaded/processed 6 RNA-Seq samples mixed in with GRO-Seq - subsequently deleted from database |
| Sample QC score | 2 |
| Sample NRO score | 2 |
| Raw read length | 75 |
| Read depth after trimming | 34,089,661 |
| Duplication proportion | 0.50092 |
| Proportion reads mapped | 0.8552 |
| Exon/intron ratio | 3.58415 |
| Unique read proportion | 0.61445 |
| Total # Tfit bidirectionals | 23087 |
| # Promoter Tfit bidirectionals | 8641 |
| # Intronic Tfit bidirectionals | 10404 |
| # Intergenic Tfit bidirectionals | 3585 |
| Total # dREG bidirectionals | 20169 |
| # Promoter dREG bidirectionals | 8469 |
| # Intronic dREG bidirectionals | 8271 |
| # Intergenic dREG bidirectionals | 3339 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |