DBNascent | Samples

SRR3713718 Sample ID 2840

**Data sources**
Paper identifier	Zhao2016high
SRP accession	SRP077005
GEO accession	GSE83660
Samples	SRR3713718

**Technical details**
QC score	2
Replicate	1
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	95 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	909 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	primary cell
Cell type	acute myeloid leukemia cell
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	DMSO	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes	cell type unclear
Analysis notes	Originally downloaded/processed 6 RNA-Seq samples mixed in with GRO-Seq - subsequently deleted from database

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	51
Read depth after trimming	37,605,587
Duplication proportion	0.59279
Proportion reads mapped	0.8087
Exon/intron ratio	3.21921
Unique read proportion	0.58138

**Bidirectionals**
Total # Tfit bidirectionals	26190
# Promoter Tfit bidirectionals	10968
# Intronic Tfit bidirectionals	10990
# Intergenic Tfit bidirectionals	3958
Total # dREG bidirectionals	20966
# Promoter dREG bidirectionals	8966
# Intronic dREG bidirectionals	8340
# Intergenic dREG bidirectionals	3420
Part of Tfit master merge?	True
Part of dREG master merge?	True