Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRR3713719 Sample ID 2841
| Paper identifier | Zhao2016high |
| SRP accession | SRP077005 |
| GEO accession | GSE83660 |
| Samples | SRR3713719 |
| QC score | 3 |
| Replicate | 1 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | primary cell |
| Cell type | acute myeloid leukemia cell |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | JQ1 (250 nM) | -1 hr | 0 hr | 1 hr |
| Pipeline info and software versions | |
| Sample notes | cell type unclear |
| Analysis notes | Originally downloaded/processed 6 RNA-Seq samples mixed in with GRO-Seq - subsequently deleted from database |
| Sample QC score | 3 |
| Sample NRO score | 2 |
| Raw read length | 51 |
| Read depth after trimming | 52,978,457 |
| Duplication proportion | 0.65456 |
| Proportion reads mapped | 0.8232 |
| Exon/intron ratio | 3.58172 |
| Unique read proportion | 0.5626 |
| Total # Tfit bidirectionals | 25743 |
| # Promoter Tfit bidirectionals | 10812 |
| # Intronic Tfit bidirectionals | 11327 |
| # Intergenic Tfit bidirectionals | 3522 |
| Total # dREG bidirectionals | 22172 |
| # Promoter dREG bidirectionals | 8773 |
| # Intronic dREG bidirectionals | 9456 |
| # Intergenic dREG bidirectionals | 3532 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |