DBNascent | Samples

SRR3728891 Sample ID 1805

**Data sources**
Paper identifier	Malinen2017crosstalk
SRP	SRP077580
Samples	SRR3728891

**Technical details**
QC score	3
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	56 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	472 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	LNCaP
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	DMSO	-2 hr	0 hr	2 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	1
Raw read length	51
Read depth after trimming	13,321,378
Duplication proportion	0.4337
Proportion reads mapped	0.9039
Exon/intron ratio	2.53018
Unique read proportion	0.57236

**Bidirectionals**
Total # Tfit bidirectionals	16939
# Promoter Tfit bidirectionals	7720
# Intronic Tfit bidirectionals	6508
# Intergenic Tfit bidirectionals	2538
Total # dREG bidirectionals	10961
# Promoter dREG bidirectionals	6074
# Intronic dREG bidirectionals	3514
# Intergenic dREG bidirectionals	1695
Part of Tfit master merge?	True
Part of dREG master merge?	True