DBNascent | Samples

SRR3728892 Sample ID 1806

**Data sources**
Paper identifier	Malinen2017crosstalk
SRP	SRP077580
Samples	SRR3728892

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	79 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	679 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	LNCaP
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	TNF-alpha (1000 U/mL)	-2 hr	0 hr	2 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	51
Read depth after trimming	19,991,904
Duplication proportion	0.40728
Proportion reads mapped	0.9108
Exon/intron ratio	2.30274
Unique read proportion	0.61936

**Bidirectionals**
Total # Tfit bidirectionals	22567
# Promoter Tfit bidirectionals	9444
# Intronic Tfit bidirectionals	9147
# Intergenic Tfit bidirectionals	3968
Total # dREG bidirectionals	15727
# Promoter dREG bidirectionals	7271
# Intronic dREG bidirectionals	6036
# Intergenic dREG bidirectionals	2869
Part of Tfit master merge?	True
Part of dREG master merge?	True