DBNascent | Samples

SRR3923617 Sample ID 2490

**Data sources**
Paper identifier	Toropainen2016global
SRP accession	SRP078536
GEO accession	GSE84432
Samples	SRR3923617

**Technical details**
QC score	1
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	83 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1013 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	VCaP
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	ethanol	-2 hr	0 hr	2 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	1
Sample NRO score	2
Raw read length	51
Read depth after trimming	20,432,910
Duplication proportion	0.33755
Proportion reads mapped	0.9399
Exon/intron ratio	3.04798
Unique read proportion	0.69077

**Bidirectionals**
Total # Tfit bidirectionals	30235
# Promoter Tfit bidirectionals	11889
# Intronic Tfit bidirectionals	12386
# Intergenic Tfit bidirectionals	5996
Total # dREG bidirectionals	23385
# Promoter dREG bidirectionals	9296
# Intronic dREG bidirectionals	9504
# Intergenic dREG bidirectionals	4757
Part of Tfit master merge?	True
Part of dREG master merge?	True