DBNascent | Samples

SRR3923618 Sample ID 2490

**Data sources**
Paper identifier	Toropainen2016global
SRP	SRP078536
Samples	SRR3923618

**Technical details**
QC score	1
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	92 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	VCaP
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	ethanol	-2 hr	0 hr	2 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	1
Sample NRO score	1
Raw read length	51
Read depth after trimming	21,969,118
Duplication proportion	0.30584
Proportion reads mapped	0.9434
Exon/intron ratio	2.99205
Unique read proportion	0.73101

**Bidirectionals**
Total # Tfit bidirectionals	34179
# Promoter Tfit bidirectionals	13062
# Intronic Tfit bidirectionals	13847
# Intergenic Tfit bidirectionals	7273
Total # dREG bidirectionals	26654
# Promoter dREG bidirectionals	9691
# Intronic dREG bidirectionals	11108
# Intergenic dREG bidirectionals	5906
Part of Tfit master merge?	True
Part of dREG master merge?	True