DBNascent | Samples

SRR3923619 Sample ID 2491

**Data sources**
Paper identifier	Toropainen2016global
SRP	SRP078536
Samples	SRR3923619

**Technical details**
QC score	1
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	98 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	VCaP
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	R1881 (10 nM)	-30 min	0 min	30 min

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	1
Sample NRO score	1
Raw read length	51
Read depth after trimming	24,051,290
Duplication proportion	0.32097
Proportion reads mapped	0.9415
Exon/intron ratio	2.87211
Unique read proportion	0.71973

**Bidirectionals**
Total # Tfit bidirectionals	34452
# Promoter Tfit bidirectionals	13180
# Intronic Tfit bidirectionals	13928
# Intergenic Tfit bidirectionals	7199
Total # dREG bidirectionals	26735
# Promoter dREG bidirectionals	9566
# Intronic dREG bidirectionals	11243
# Intergenic dREG bidirectionals	5874
Part of Tfit master merge?	True
Part of dREG master merge?	True