DBNascent | Samples

SRR3923620 Sample ID 2493

**Data sources**
Paper identifier	Toropainen2016global
SRP accession	SRP078536
GEO accession	GSE84432
Samples	SRR3923620

**Technical details**
QC score	1
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	99 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	VCaP
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	R1881 (10 nM)	-30 min	0 min	30 min

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	1
Sample NRO score	1
Raw read length	51
Read depth after trimming	24,241,483
Duplication proportion	0.31956
Proportion reads mapped	0.9457
Exon/intron ratio	2.70892
Unique read proportion	0.72818

**Bidirectionals**
Total # Tfit bidirectionals	32851
# Promoter Tfit bidirectionals	12159
# Intronic Tfit bidirectionals	13575
# Intergenic Tfit bidirectionals	7080
Total # dREG bidirectionals	27081
# Promoter dREG bidirectionals	9734
# Intronic dREG bidirectionals	11464
# Intergenic dREG bidirectionals	5984
Part of Tfit master merge?	True
Part of dREG master merge?	True