DBNascent | Samples

SRR3923622 Sample ID 2494

**Data sources**
Paper identifier	Toropainen2016global
SRP	SRP078536
Samples	SRR3923622

**Technical details**
QC score	1
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	92 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	1010 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	VCaP
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	R1881 (10 nM)	-2 hr	0 hr	2 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	1
Sample NRO score	1
Raw read length	51
Read depth after trimming	22,411,224
Duplication proportion	0.33103
Proportion reads mapped	0.947
Exon/intron ratio	2.32506
Unique read proportion	0.72318

**Bidirectionals**
Total # Tfit bidirectionals	27321
# Promoter Tfit bidirectionals	10446
# Intronic Tfit bidirectionals	11518
# Intergenic Tfit bidirectionals	5340
Total # dREG bidirectionals	23312
# Promoter dREG bidirectionals	8928
# Intronic dREG bidirectionals	9900
# Intergenic dREG bidirectionals	4733
Part of Tfit master merge?	True
Part of dREG master merge?	True