DBNascent | Samples

SRR4001596 Sample ID 2497

**Data sources**
Paper identifier	Toropainen2016global
SRP accession	SRP078536
GEO accession	GSE84432
Samples	SRR4001596

**Technical details**
QC score	2
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	71 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	619 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	VCaP
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	ethanol	-4 hr	0 hr	4 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	51
Read depth after trimming	17,664,745
Duplication proportion	0.32829
Proportion reads mapped	0.8831
Exon/intron ratio	2.40887
Unique read proportion	0.7024

**Bidirectionals**
Total # Tfit bidirectionals	20527
# Promoter Tfit bidirectionals	6571
# Intronic Tfit bidirectionals	9354
# Intergenic Tfit bidirectionals	4037
Total # dREG bidirectionals	14375
# Promoter dREG bidirectionals	5855
# Intronic dREG bidirectionals	5907
# Intergenic dREG bidirectionals	2856
Part of Tfit master merge?	True
Part of dREG master merge?	True