DBNascent | Samples

SRR4001597 Sample ID 2498

**Data sources**
Paper identifier	Toropainen2016global
SRP accession	SRP078536
GEO accession	GSE84432
Samples	SRR4001597

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	67 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	597 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	VCaP
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	dihydrotestosterone (100 nM)	-4 hr	0 hr	4 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	51
Read depth after trimming	16,349,037
Duplication proportion	0.32568
Proportion reads mapped	0.8856
Exon/intron ratio	2.03735
Unique read proportion	0.70173

**Bidirectionals**
Total # Tfit bidirectionals	18866
# Promoter Tfit bidirectionals	6729
# Intronic Tfit bidirectionals	8479
# Intergenic Tfit bidirectionals	3320
Total # dREG bidirectionals	13838
# Promoter dREG bidirectionals	6165
# Intronic dREG bidirectionals	5684
# Intergenic dREG bidirectionals	2295
Part of Tfit master merge?	True
Part of dREG master merge?	True