DBNascent | Samples

SRR4001598 Sample ID 2498

**Data sources**
Paper identifier	Toropainen2016global
SRP	SRP078536
Samples	SRR4001598

**Technical details**
QC score	2
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	74 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	602 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	VCaP
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	dihydrotestosterone (100 nM)	-4 hr	0 hr	4 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	51
Read depth after trimming	18,642,585
Duplication proportion	0.3323
Proportion reads mapped	0.8798
Exon/intron ratio	2.00877
Unique read proportion	0.70679

**Bidirectionals**
Total # Tfit bidirectionals	19289
# Promoter Tfit bidirectionals	6783
# Intronic Tfit bidirectionals	8715
# Intergenic Tfit bidirectionals	3325
Total # dREG bidirectionals	13953
# Promoter dREG bidirectionals	5961
# Intronic dREG bidirectionals	5866
# Intergenic dREG bidirectionals	2418
Part of Tfit master merge?	True
Part of dREG master merge?	True