Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRR4019505 Sample ID 1733
| Paper identifier | Lu2017nascent |
| SRP accession | SRP081278 |
| GEO accession | GSE85478 |
| Samples | SRR4019505 |
| QC score | 4 |
| Replicate | 2 |
| Protocol | GRO-seq variant |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | paired |
| Raw strandedness | read1 reverse |
| Reverse complemented? | False |
| Mapped strandedness | read1 reverse |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 31 Mb |
| Organism | P. falciparum |
| Sample type | organism |
| Cell type | late ring parasite |
| Clone/Individual | |
| Strain | 3D7 |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | Run-on with EU (Click-iT) bases |
| Analysis notes | Unstranded |
| Sample QC score | 4 |
| Sample NRO score | 3 |
| Raw read length | 35 |
| Read depth after trimming | 20,199,207 |
| Duplication proportion | 0.74109 |
| Proportion reads mapped | 0.6954 |
| Exon/intron ratio | 5.46411 |
| Unique read proportion | 0.15908 |
| Total # Tfit bidirectionals | None |
| # Promoter Tfit bidirectionals | None |
| # Intronic Tfit bidirectionals | None |
| # Intergenic Tfit bidirectionals | None |
| Total # dREG bidirectionals | None |
| # Promoter dREG bidirectionals | None |
| # Intronic dREG bidirectionals | None |
| # Intergenic dREG bidirectionals | None |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |