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SRR4019507 Sample ID 1735
| Paper identifier | Lu2017nascent |
| SRP accession | SRP081278 |
| GEO accession | GSE85478 |
| Samples | SRR4019507 |
| QC score | 5 |
| Replicate | 1 |
| Protocol | GRO-seq variant |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | paired |
| Raw strandedness | read1 reverse |
| Reverse complemented? | False |
| Mapped strandedness | read1 reverse |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 5 Mb |
| Organism | P. falciparum |
| Sample type | organism |
| Cell type | early trophozoite parasite |
| Clone/Individual | |
| Strain | 3D7 |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | Negative control - no EU incorporation |
| Analysis notes | Unstranded |
| Sample QC score | 5 |
| Sample NRO score | 5 |
| Raw read length | 51 |
| Read depth after trimming | 4,045,767 |
| Duplication proportion | 0.79094 |
| Proportion reads mapped | 0.4806 |
| Exon/intron ratio | 16.7158 |
| Unique read proportion | 0.02648 |
| Total # Tfit bidirectionals | None |
| # Promoter Tfit bidirectionals | None |
| # Intronic Tfit bidirectionals | None |
| # Intergenic Tfit bidirectionals | None |
| Total # dREG bidirectionals | None |
| # Promoter dREG bidirectionals | None |
| # Intronic dREG bidirectionals | None |
| # Intergenic dREG bidirectionals | None |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |