DBNascent | Samples

SRR4019516 Sample ID 1744

**Data sources**
Paper identifier	Lu2017nascent
SRP accession	SRP081278
GEO accession	GSE85478
Samples	SRR4019516

**Technical details**
QC score	5
Replicate	1
Protocol	GRO-seq variant
Library prep	ligation
Spike-in	None
Single/Paired end	paired
Raw strandedness	read1 reverse
Reverse complemented?	False
Mapped strandedness	read1 reverse
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	4 Mb
Stranded gene read counts	TXT file
Unstranded bidirectional read counts	TXT file
Tfit bidirectional regions	BED file
dREG bidirectional regions	BED file
All data files	ZIP archive

**Cellular details**
Organism	P. falciparum
Sample type	organism
Cell type	late schizont parasite
Clone/Individual
Strain	3D7
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	Negative control - no EU incorporation
Analysis notes	Unstranded

**Sample metrics**
Sample QC score	5
Sample NRO score	5
Raw read length	51
Read depth after trimming	890,477
Duplication proportion	0.60851
Proportion reads mapped	0.5663
Exon/intron ratio	13.0018
Unique read proportion	0.0395

**Bidirectionals**
Total # Tfit bidirectionals	None
# Promoter Tfit bidirectionals	None
# Intronic Tfit bidirectionals	None
# Intergenic Tfit bidirectionals	None
Total # dREG bidirectionals	None
# Promoter dREG bidirectionals	None
# Intronic dREG bidirectionals	None
# Intergenic dREG bidirectionals	None
Part of Tfit master merge?	False
Part of dREG master merge?	False