DBNascent | Samples

SRR4019518 Sample ID 1746

**Data sources**
Paper identifier	Lu2017nascent
SRP accession	SRP081278
GEO accession	GSE85478
Samples	SRR4019518

**Technical details**
QC score	5
Replicate	1
Protocol	GRO-seq variant
Library prep	ligation
Spike-in	None
Single/Paired end	paired
Raw strandedness	read1 reverse
Reverse complemented?	False
Mapped strandedness	read1 reverse
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	18 Mb
Stranded gene read counts	TXT file
Unstranded bidirectional read counts	TXT file
Tfit bidirectional regions	BED file
dREG bidirectional regions	BED file
All data files	ZIP archive

**Cellular details**
Organism	P. falciparum
Sample type	organism
Cell type	gametoyte stage III parasite
Clone/Individual
Strain	NF54
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	Run-on with EU (Click-iT) bases
Analysis notes	Unstranded

**Sample metrics**
Sample QC score	5
Sample NRO score	1
Raw read length	35
Read depth after trimming	5,384,241
Duplication proportion	0.55126
Proportion reads mapped	0.6286
Exon/intron ratio	2.83763
Unique read proportion	0.16338

**Bidirectionals**
Total # Tfit bidirectionals	None
# Promoter Tfit bidirectionals	None
# Intronic Tfit bidirectionals	None
# Intergenic Tfit bidirectionals	None
Total # dREG bidirectionals	None
# Promoter dREG bidirectionals	None
# Intronic dREG bidirectionals	None
# Intergenic dREG bidirectionals	None
Part of Tfit master merge?	False
Part of dREG master merge?	False