Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRR4053664 Sample ID 899
| Paper identifier | Godfrey2017mll |
| SRP accession | SRP082679 |
| GEO accession | GSE85988 |
| Samples | SRR4053664 |
| QC score | 1 |
| Replicate | 1 |
| Protocol | TT-seq |
| Library prep | random primed |
| Spike-in | None |
| Single/Paired end | paired |
| Raw strandedness | read1 reverse |
| Reverse complemented? | False |
| Mapped strandedness | read1 reverse |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 361 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 1 Mb |
| dREG bidirectional regions | BED file | 599 Kb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | SEM |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct | siRNA control |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | 4sU-seq |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 1 |
| Sample NRO score | 5 |
| Raw read length | 35 |
| Read depth after trimming | 85,312,769 |
| Duplication proportion | 0.3619 |
| Proportion reads mapped | 0.8755 |
| Exon/intron ratio | 9.0579 |
| Unique read proportion | 0.56567 |
| Total # Tfit bidirectionals | 13894 |
| # Promoter Tfit bidirectionals | 6733 |
| # Intronic Tfit bidirectionals | 5281 |
| # Intergenic Tfit bidirectionals | 908 |
| Total # dREG bidirectionals | 13816 |
| # Promoter dREG bidirectionals | 5493 |
| # Intronic dREG bidirectionals | 5514 |
| # Intergenic dREG bidirectionals | 1871 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |