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SRR4053669 Sample ID 904
| Paper identifier | Godfrey2017mll |
| SRP accession | SRP082679 |
| GEO accession | GSE85988 |
| Samples | SRR4053669 |
| QC score | 1 |
| Replicate | 3 |
| Protocol | TT-seq |
| Library prep | random primed |
| Spike-in | None |
| Single/Paired end | paired |
| Raw strandedness | read1 reverse |
| Reverse complemented? | False |
| Mapped strandedness | read1 reverse |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | SEM |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct | siRNA Mll-Af4 |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | 4sU-seq |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 1 |
| Sample NRO score | 4 |
| Raw read length | 35 |
| Read depth after trimming | 87,718,984 |
| Duplication proportion | 0.3034 |
| Proportion reads mapped | 0.8661 |
| Exon/intron ratio | 7.77262 |
| Unique read proportion | 0.63009 |
| Total # Tfit bidirectionals | 13584 |
| # Promoter Tfit bidirectionals | 6599 |
| # Intronic Tfit bidirectionals | 5192 |
| # Intergenic Tfit bidirectionals | 926 |
| Total # dREG bidirectionals | 14690 |
| # Promoter dREG bidirectionals | 5571 |
| # Intronic dREG bidirectionals | 5960 |
| # Intergenic dREG bidirectionals | 2153 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |