DBNascent | Samples

SRR408117 Sample ID 1808

**Data sources**
Paper identifier	Marazzi2012suppression
SRP	SRP010907
Samples	SRR408117

**Technical details**
QC score	4
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	67 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	670 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	A549
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	4
Sample NRO score	1
Raw read length	51
Read depth after trimming	96,519,840
Duplication proportion	0.84531
Proportion reads mapped	0.546
Exon/intron ratio	2.54038
Unique read proportion	0.33746

**Bidirectionals**
Total # Tfit bidirectionals	20060
# Promoter Tfit bidirectionals	9255
# Intronic Tfit bidirectionals	7704
# Intergenic Tfit bidirectionals	3149
Total # dREG bidirectionals	15539
# Promoter dREG bidirectionals	8247
# Intronic dREG bidirectionals	5156
# Intergenic dREG bidirectionals	2294
Part of Tfit master merge?	True
Part of dREG master merge?	True