DBNascent | Samples

SRR408118 Sample ID 1810

**Data sources**
Paper identifier	Marazzi2012suppression
SRP accession	SRP010907
GEO accession	GSE35774
Samples	SRR408118

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	80 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	753 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	A549
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	influenza A virus Flag-NS1 (MOI 0.01)	-12 hr	0 hr	12 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	3
Sample NRO score	1
Raw read length	51
Read depth after trimming	90,164,686
Duplication proportion	0.7892
Proportion reads mapped	0.5668
Exon/intron ratio	2.67921
Unique read proportion	0.33954

**Bidirectionals**
Total # Tfit bidirectionals	25108
# Promoter Tfit bidirectionals	11729
# Intronic Tfit bidirectionals	9489
# Intergenic Tfit bidirectionals	3918
Total # dREG bidirectionals	17371
# Promoter dREG bidirectionals	8530
# Intronic dREG bidirectionals	6119
# Intergenic dREG bidirectionals	2732
Part of Tfit master merge?	True
Part of dREG master merge?	True