DBNascent | Samples

SRR408119 Sample ID 1810

**Data sources**
Paper identifier	Marazzi2012suppression
SRP	SRP010907
Samples	SRR408119

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	102 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	915 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	A549
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	influenza A virus Flag-deltaPAF (MOI 0.01)	-12 hr	0 hr	12 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	3
Sample NRO score	1
Raw read length	51
Read depth after trimming	96,183,387
Duplication proportion	0.68324
Proportion reads mapped	0.5119
Exon/intron ratio	2.66206
Unique read proportion	0.39581

**Bidirectionals**
Total # Tfit bidirectionals	30926
# Promoter Tfit bidirectionals	13764
# Intronic Tfit bidirectionals	11624
# Intergenic Tfit bidirectionals	5858
Total # dREG bidirectionals	21026
# Promoter dREG bidirectionals	9144
# Intronic dREG bidirectionals	7913
# Intergenic dREG bidirectionals	4060
Part of Tfit master merge?	True
Part of dREG master merge?	True