Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRR4090104 Sample ID 131
| Paper identifier | Andrysik2017identification |
| SRP accession | SRP083189 |
| GEO accession | GSE86165 |
| Samples | SRR4090104 |
| QC score | 1 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 138 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 3 Mb |
| dREG bidirectional regions | BED file | 1 Mb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | MCF7 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | nutlin-3 (10 microM) | -1 hr | 0 hr | 1 hr |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 1 |
| Sample NRO score | 2 |
| Raw read length | 50 |
| Read depth after trimming | 39,450,817 |
| Duplication proportion | 0.41455 |
| Proportion reads mapped | 0.9424 |
| Exon/intron ratio | 3.51451 |
| Unique read proportion | 0.65522 |
| Total # Tfit bidirectionals | 37650 |
| # Promoter Tfit bidirectionals | 16348 |
| # Intronic Tfit bidirectionals | 13668 |
| # Intergenic Tfit bidirectionals | 6666 |
| Total # dREG bidirectionals | 24713 |
| # Promoter dREG bidirectionals | 7573 |
| # Intronic dREG bidirectionals | 9711 |
| # Intergenic dREG bidirectionals | 5989 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |