DBNascent | Samples

SRR4090108 Sample ID 135

**Data sources**
Paper identifier	Andrysik2017identification
SRP accession	SRP083189
GEO accession	GSE86165
Samples	SRR4090108

**Technical details**
QC score	1
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	199 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	4 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	SJSA
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	nutlin-3 (10 microM)	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	1
Sample NRO score	2
Raw read length	50
Read depth after trimming	53,227,310
Duplication proportion	0.33859
Proportion reads mapped	0.9316
Exon/intron ratio	3.03827
Unique read proportion	0.74691

**Bidirectionals**
Total # Tfit bidirectionals	48240
# Promoter Tfit bidirectionals	18034
# Intronic Tfit bidirectionals	17961
# Intergenic Tfit bidirectionals	10174
Total # dREG bidirectionals	30778
# Promoter dREG bidirectionals	7999
# Intronic dREG bidirectionals	13570
# Intergenic dREG bidirectionals	7929
Part of Tfit master merge?	True
Part of dREG master merge?	True