DBNascent | Samples

SRR4090109 Sample ID 136

**Data sources**
Paper identifier	Andrysik2017identification
SRP accession	SRP083189
GEO accession	GSE86165
Samples	SRR4090109

**Technical details**
QC score	1
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	173 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	4 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	SJSA
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	nutlin-3 (10 microM)	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	1
Sample NRO score	2
Raw read length	50
Read depth after trimming	48,987,978
Duplication proportion	0.38495
Proportion reads mapped	0.9161
Exon/intron ratio	3.351
Unique read proportion	0.69929

**Bidirectionals**
Total # Tfit bidirectionals	49227
# Promoter Tfit bidirectionals	17515
# Intronic Tfit bidirectionals	19876
# Intergenic Tfit bidirectionals	9993
Total # dREG bidirectionals	30825
# Promoter dREG bidirectionals	7910
# Intronic dREG bidirectionals	13898
# Intergenic dREG bidirectionals	7649
Part of Tfit master merge?	True
Part of dREG master merge?	True