SRR4305538 Sample ID 906

Data sources
Paper identifier Godfrey2017mll
SRP accession SRP082679
GEO accession GSE85988
Samples SRR4305538
Technical details
QC score 1
Replicate 2
Protocol TT-seq
Library prep random primed
Spike-in None
Single/Paired end paired
Raw strandedness read1 reverse
Reverse complemented? False
Mapped strandedness read1 reverse
Timecourse False
Control/Experimental control
Wildtype & Untreated? True
Outlier No
Unusable No
Downloads
TDF visualization file TDF file 201 Mb
Stranded gene read counts TXT file 1 Mb
Unstranded bidirectional read counts TXT file 21 Mb
Tfit bidirectional regions BED file 1 Mb
dREG bidirectional regions BED file 405 Kb
All data files ZIP archive
Cellular details
Organism H. sapiens
Sample type cell line
Cell type SEM
Clone/Individual
Strain
Genotype
Construct
Conditions and treatments
Condition type Treatment Start time End time Duration
vehicle DMSO -7 day 0 day 7 day
Extended notes
Pipeline info and software versions
Sample notes 4sU-seq
Analysis notes Ran qc redo nextflow
Sample metrics
Sample QC score 1
Sample NRO score 4
Raw read length 35
Read depth after trimming 44,043,061
Duplication proportion 0.36426
Proportion reads mapped 0.9533
Exon/intron ratio 8.07227
Unique read proportion 0.51312
Bidirectionals
Total # Tfit bidirectionals 11781
# Promoter Tfit bidirectionals 5963
# Intronic Tfit bidirectionals 4649
# Intergenic Tfit bidirectionals 505
Total # dREG bidirectionals 9371
# Promoter dREG bidirectionals 4592
# Intronic dREG bidirectionals 3343
# Intergenic dREG bidirectionals 1054
Part of Tfit master merge? True
Part of dREG master merge? True