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SRR4305538 Sample ID 906
| Paper identifier | Godfrey2017mll |
| SRP accession | SRP082679 |
| GEO accession | GSE85988 |
| Samples | SRR4305538 |
| QC score | 1 |
| Replicate | 2 |
| Protocol | TT-seq |
| Library prep | random primed |
| Spike-in | None |
| Single/Paired end | paired |
| Raw strandedness | read1 reverse |
| Reverse complemented? | False |
| Mapped strandedness | read1 reverse |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | SEM |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| vehicle | DMSO | -7 day | 0 day | 7 day |
| Pipeline info and software versions | |
| Sample notes | 4sU-seq |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 1 |
| Sample NRO score | 4 |
| Raw read length | 35 |
| Read depth after trimming | 44,043,061 |
| Duplication proportion | 0.36426 |
| Proportion reads mapped | 0.9533 |
| Exon/intron ratio | 8.07227 |
| Unique read proportion | 0.51312 |
| Total # Tfit bidirectionals | 11781 |
| # Promoter Tfit bidirectionals | 5963 |
| # Intronic Tfit bidirectionals | 4649 |
| # Intergenic Tfit bidirectionals | 505 |
| Total # dREG bidirectionals | 9371 |
| # Promoter dREG bidirectionals | 4592 |
| # Intronic dREG bidirectionals | 3343 |
| # Intergenic dREG bidirectionals | 1054 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |