DBNascent | Samples

SRR4305539 Sample ID 907

**Data sources**
Paper identifier	Godfrey2017mll
SRP accession	SRP082679
GEO accession	GSE85988
Samples	SRR4305539

**Technical details**
QC score	1
Replicate	3
Protocol	TT-seq
Library prep	random primed
Spike-in	None
Single/Paired end	paired
Raw strandedness	read1 reverse
Reverse complemented?	False
Mapped strandedness	read1 reverse
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	219 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	1008 Kb
dREG bidirectional regions	BED file	410 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	SEM
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	DMSO	-7 day	0 day	7 day

**Extended notes**
Pipeline info and software versions
Sample notes	4sU-seq
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	1
Sample NRO score	4
Raw read length	35
Read depth after trimming	43,929,368
Duplication proportion	0.32393
Proportion reads mapped	0.9499
Exon/intron ratio	7.34679
Unique read proportion	0.55606

**Bidirectionals**
Total # Tfit bidirectionals	11513
# Promoter Tfit bidirectionals	5661
# Intronic Tfit bidirectionals	4511
# Intergenic Tfit bidirectionals	564
Total # dREG bidirectionals	9498
# Promoter dREG bidirectionals	4396
# Intronic dREG bidirectionals	3503
# Intergenic dREG bidirectionals	1133
Part of Tfit master merge?	True
Part of dREG master merge?	True