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SRR4454567 Sample ID 2536
| Paper identifier | Vihervaara2017transcriptional |
| SRP accession | SRP092163 |
| GEO accession | GSE89230 |
| Samples | SRR4454567 |
| QC score | 2 |
| Replicate | 1 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 253 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 3 Mb |
| dREG bidirectional regions | BED file | 1 Mb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | K562 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 2 |
| Sample NRO score | 2 |
| Raw read length | 32 |
| Read depth after trimming | 98,057,531 |
| Duplication proportion | 0.52036 |
| Proportion reads mapped | 0.7123 |
| Exon/intron ratio | 4.17857 |
| Unique read proportion | 0.70383 |
| Total # Tfit bidirectionals | 33880 |
| # Promoter Tfit bidirectionals | 16482 |
| # Intronic Tfit bidirectionals | 11158 |
| # Intergenic Tfit bidirectionals | 6939 |
| Total # dREG bidirectionals | 34752 |
| # Promoter dREG bidirectionals | 7637 |
| # Intronic dREG bidirectionals | 15078 |
| # Intergenic dREG bidirectionals | 10206 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |