DBNascent | Samples

SRR4454567 Sample ID 2536

**Data sources**
Paper identifier	Vihervaara2017transcriptional
SRP accession	SRP092163
GEO accession	GSE89230
Samples	SRR4454567

**Technical details**
QC score	2
Replicate	1
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	253 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	K562
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	32
Read depth after trimming	98,057,531
Duplication proportion	0.52036
Proportion reads mapped	0.7123
Exon/intron ratio	4.17857
Unique read proportion	0.70383

**Bidirectionals**
Total # Tfit bidirectionals	33880
# Promoter Tfit bidirectionals	16482
# Intronic Tfit bidirectionals	11158
# Intergenic Tfit bidirectionals	6939
Total # dREG bidirectionals	34752
# Promoter dREG bidirectionals	7637
# Intronic dREG bidirectionals	15078
# Intergenic dREG bidirectionals	10206
Part of Tfit master merge?	True
Part of dREG master merge?	True