DBNascent | Samples

SRR4454568 Sample ID 2537

**Data sources**
Paper identifier	Vihervaara2017transcriptional
SRP accession	SRP092163
GEO accession	GSE89230
Samples	SRR4454568

**Technical details**
QC score	1
Replicate	2
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	111 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	831 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	K562
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	1
Sample NRO score	2
Raw read length	32
Read depth after trimming	35,335,856
Duplication proportion	0.43549
Proportion reads mapped	0.738
Exon/intron ratio	4.13935
Unique read proportion	0.68108

**Bidirectionals**
Total # Tfit bidirectionals	26157
# Promoter Tfit bidirectionals	13671
# Intronic Tfit bidirectionals	9002
# Intergenic Tfit bidirectionals	4078
Total # dREG bidirectionals	19015
# Promoter dREG bidirectionals	7684
# Intronic dREG bidirectionals	6600
# Intergenic dREG bidirectionals	3849
Part of Tfit master merge?	True
Part of dREG master merge?	True