DBNascent | Samples

SRR4454569 Sample ID 2538

**Data sources**
Paper identifier	Vihervaara2017transcriptional
SRP accession	SRP092163
GEO accession	GSE89230
Samples	SRR4454569

**Technical details**
QC score	2
Replicate	1
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	255 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	2 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	K562
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	heat shock (42 Celsius)	-30 min	0 min	30 min

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	32
Read depth after trimming	130,311,998
Duplication proportion	0.63485
Proportion reads mapped	0.6685
Exon/intron ratio	4.69309
Unique read proportion	0.5972

**Bidirectionals**
Total # Tfit bidirectionals	32982
# Promoter Tfit bidirectionals	15360
# Intronic Tfit bidirectionals	11398
# Intergenic Tfit bidirectionals	6949
Total # dREG bidirectionals	44342
# Promoter dREG bidirectionals	9820
# Intronic dREG bidirectionals	19840
# Intergenic dREG bidirectionals	13566
Part of Tfit master merge?	True
Part of dREG master merge?	True