DBNascent | Samples

SRR4454570 Sample ID 2539

**Data sources**
Paper identifier	Vihervaara2017transcriptional
SRP accession	SRP092163
GEO accession	GSE89230
Samples	SRR4454570

**Technical details**
QC score	1
Replicate	2
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	107 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	925 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	K562
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	heat shock (42 Celsius)	-30 min	0 min	30 min

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	1
Sample NRO score	2
Raw read length	32
Read depth after trimming	33,373,631
Duplication proportion	0.4022
Proportion reads mapped	0.7235
Exon/intron ratio	3.90172
Unique read proportion	0.68931

**Bidirectionals**
Total # Tfit bidirectionals	23679
# Promoter Tfit bidirectionals	11287
# Intronic Tfit bidirectionals	8550
# Intergenic Tfit bidirectionals	4464
Total # dREG bidirectionals	21362
# Promoter dREG bidirectionals	9105
# Intronic dREG bidirectionals	7670
# Intergenic dREG bidirectionals	4612
Part of Tfit master merge?	True
Part of dREG master merge?	True