Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRR497911 Sample ID 919
| Paper identifier | Hah2011rapid |
| SRP accession | SRP013239 |
| GEO accession | GSE27463 |
| Samples | SRR497911 |
| QC score | 4 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | True |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | MCF7 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | 17-beta-estradiol (100 nM) | -10 min | 0 min | 10 min |
| Pipeline info and software versions | |
| Sample notes | Also in SRM497911 |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 4 |
| Sample NRO score | 2 |
| Raw read length | 44 |
| Read depth after trimming | 7,266,821 |
| Duplication proportion | 0.38653 |
| Proportion reads mapped | 0.7969 |
| Exon/intron ratio | 3.03431 |
| Unique read proportion | 0.57967 |
| Total # Tfit bidirectionals | 16278 |
| # Promoter Tfit bidirectionals | 5222 |
| # Intronic Tfit bidirectionals | 7541 |
| # Intergenic Tfit bidirectionals | 2599 |
| Total # dREG bidirectionals | 9035 |
| # Promoter dREG bidirectionals | 5126 |
| # Intronic dREG bidirectionals | 2901 |
| # Intergenic dREG bidirectionals | 1249 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |