DBNascent | Samples

SRR497921 Sample ID 920

**Data sources**
Paper identifier	Hah2011rapid
SRP	SRP013239
Samples	SRR497921

**Technical details**
QC score	4
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Timecourse	True
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	37 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	372 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	17-beta-estradiol (100 nM)	-160 min	0 min	160 min

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	4
Sample NRO score	1
Raw read length	44
Read depth after trimming	11,719,627
Duplication proportion	0.50213
Proportion reads mapped	0.6793
Exon/intron ratio	2.93962
Unique read proportion	0.49019

**Bidirectionals**
Total # Tfit bidirectionals	15582
# Promoter Tfit bidirectionals	5027
# Intronic Tfit bidirectionals	7401
# Intergenic Tfit bidirectionals	2160
Total # dREG bidirectionals	8656
# Promoter dREG bidirectionals	5347
# Intronic dREG bidirectionals	2672
# Intergenic dREG bidirectionals	969
Part of Tfit master merge?	True
Part of dREG master merge?	True