DBNascent | Samples

SRR5034774 Sample ID 1927

**Data sources**
Paper identifier	Ngoc2017human
SRP	SRP093742
Samples	SRR5034774

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	74 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	5'GRO-seq with RNA fragmentation
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	75
Read depth after trimming	28,646,781
Duplication proportion	0.63354
Proportion reads mapped	0.879
Exon/intron ratio	3.68356
Unique read proportion	0.48625

**Bidirectionals**
Total # Tfit bidirectionals	35122
# Promoter Tfit bidirectionals	10555
# Intronic Tfit bidirectionals	14354
# Intergenic Tfit bidirectionals	10178
Total # dREG bidirectionals	31902
# Promoter dREG bidirectionals	10551
# Intronic dREG bidirectionals	12609
# Intergenic dREG bidirectionals	9402
Part of Tfit master merge?	True
Part of dREG master merge?	True